/usr/bin and /usr/lib are by default also automatic mount points generated by the Cygwin DLL similar to the way the root directory is evaluated. /usr/bin points to the directory the Cygwin DLL is installed in, /usr/lib is supposed to point to the /lib directory. This choice is safe and usually shouldn't be changed. An fstab entry for them is not required.

$ make configure
$ ./configure --prefix=/usr
$ make al